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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA

Basic information

species Selaginella moellendorffii
transcript EFJ34803
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34803 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 6
-------------------------------gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA
                                |  | |  | ||       | | ||    |||  |||     ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| || |||  | | ||  | || ||  |  | | 
gtaatatatatttgctctggagtttctggatttttgccataatatgtggagtgtttcactaattcaattaatcatgtagACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAG

upper sequence: EFJ34803 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 4
-----------------------gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA
                        |  | |  | |  |     | | ||    |||  |||     |||||||| ||||| |||||||| ||||| ||||||||||| || || ||||| || | |  | | ||  | || ||  |  | | 
gtaataatatatttgctctggatttttgccataatttattgagtatttcactaattcaattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA
           gtctgat  putative branch site (score: 4)
                                      tttcattttc  putative PPT
                                     atttcatttt  TA-rich tract