1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagctatccaactctcgaacgcaaacacgacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
species | Selaginella moellendorffii |
transcript | EFJ34707 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169099696|gb|FE503093.1|FE503093
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169045763|gb|FE451190.1|FE451190
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169115022|gb|FE516387.1|FE516387
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169035004|gb|FE444852.1|FE444852
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169040864|gb|FE447915.1|FE447915
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169102685|gb|FE508079.1|FE508079
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGNGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169050328|gb|FE457550.1|FE457550
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169099376|gb|FE500992.1|FE500992
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169035005|gb|FE444853.1|FE444853
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
gacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
tgctgac putative branch site (score: 29)
ttctcgtttct putative PPT
aagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatccaactctcgaacgcaaacacgacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT