Sequence
atgc intronic sequence ATGC exonic sequencegtttgatttttctttcttttttggccttggtgctcagAGTTCTCTACTTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ34676 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------------------------------gtttgatttt---tctttcttttttggccttggtgctcagAGTTCTCTACTTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG
| || | | || | | | | | || || | || | | | ||||| |||||||| || || ||||||||||||||| || |||||||||||||||
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
upper sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------------------------gtttgatttttcttt-cttttttggcc----ttggtgctcagAGTTCT-----CTAC--TTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG
|| ||| || | || | |||| | | || |||||| || | || | ||||| |||||||| || || ||||||||||||||| || |||||||||||||||
gtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttgatttttctttcttttttggccttggtgctcagAGTTCTCTACTTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG
tttgatttttctttct CT-rich tract
tttgatttttctttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgatttttctttcttttttggccttggtgctcagAGTTCTCTACTTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA