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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacctgtgaactttaattgcgagagttcgtgcatttctctatttcaatcgcacttaaaattcccattccttctgtaccagGTTCGAAGGGAGAAAATCAGCGAGCGTATGAAGTTCTTGCAGGATCTAGTACCCGGATGTAACAAA

Basic information

species Selaginella moellendorffii
transcript EFJ34195
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34195 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S145_69V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------gtaagctacctgtgaactttaattgcgagagttcgtgcatttctc---tatttcaatcgcact---taaaattcccattccttctgtac------cagGTTCGAAGGGAGAAAATCAGCGAGCGTATGAAGTTCTTGCAGGATCTAGTACCCGGATGTAACAAA----------------------------------
                                    |      |   ||| | || |   ||  ||| || | |  ||    || ||  | |||||   | |  |      || |  |||||      |||||||| |||||||| ||||||||||| |||||||   | ||||| ||||| || || || || |||                                  
gtaaaatcccagatcccaagtttccttctcgattcgattcgattcataacctcaactattagtattc-tgaactcgtcacacatctctgtagcactccctgacgtgagtcatcatgttgtacgctcctcagGTTCGCAGGGAGAAGATCAGCGAGCGGATGAAGTATCTTCAGGACCTAGTTCCTGGCTGCAATAAAGTGACCGGCAAGGCAGTGATGCTCGACGAGATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtgcatttctctatttcaatcgcacttaaaattcccattccttctgtaccagGTTCGAAGGGAGAAAATCAGCGAGCGTATGAAGTTCTTGCAGGATCTAGTACCCGGATGTAACAAA
                                  ttcccattccttctgt  CT-rich tract
                          acttaaaatt  TA-rich tract