1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgtgctctaagaactccataggattgtgattgattcatcgtcttgcttgcagTCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTTGAGATCCTTGGCGGGATCCCGGAGACTTGGCCTCGCCTTTTGAGCGCGC
species | Selaginella moellendorffii |
transcript | EFJ32392 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGACACGGAAGAAGTGATCAGGGAAAGGGTCCGGATCTACTCCCTGGAG TCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTTEST: gi|169072615|gb|FE481580.1|FE481580
genomic: ACGACACGGAAGAAGTGATCAGGGAAAGGGTCCGGATCTACTCCCAGGAGgtctgtgctc ... ttgcttgcagTCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTT
EST: ACGACACGGAAGAAGTGATCAGGGAAAGGGTCCGGATCTACTCCCTGGAG TCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTT
genomic: ACGACACGGAAGAAGTGATCAGGGAAAGGGTCCGGATCTACTCCCAGGAGgtctgtgctc ... ttgcttgcagTCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTT
gtctgtgctctaagaactccataggattgtgattgattcatcgtcttgcttgcagTCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTTGAGATCCTTGGCGGGATCCCGGAGACTTGGCCTCGCCTTTTGAGCGCGC
gattgat putative branch site (score: 16)
tcttgctt putative PPT
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgctctaagaactccataggattgtgattgattcatcgtcttgcttgcagTCGAGACCCGTGGAGGACTACTATAGAGCACAGGGGAAGCTGCTTGACTTTGAGATCCTTGGCGGGATCCCGGAGACTTGGCCTCGCCTTTTGAGCGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC