1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtctttccttgctttgtctgataactcacttttgtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTACATGGGTGCCAATCTTGCGGTATTGTTTCAGCAACTTGCAGCTATGGAGG
species | Selaginella moellendorffii |
transcript | EFJ31704 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCNACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAG GCATTCGCTGAAATACCCGAEST: gi|169049137|gb|FE457125.1|FE457125
genomic: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAGgtttgtcttt ... gtcgtaacagGCATTCGCTGAAATACCCGA
EST: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAG GCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTACEST: gi|169080904|gb|FE489206.1|FE489206
genomic: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAGgtttgtcttt ... gtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTAC
EST: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAG GCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTACEST: gi|169056405|gb|FE466984.1|FE466984
genomic: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAGgtttgtcttt ... gtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTAC
EST: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAG GCATTCGCTGAAATACCCGATCTAACTGTGT
genomic: TTCCAACTATTACGTGCACTTCGTCCAACGTTGTCCAGACAGTACTACAGgtttgtcttt ... gtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGT
gtttgtctttccttgctttgtctgataactcacttttgtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTACATGGGTGCCAATCTTGCGGTATTGTTTCAGCAACTTGCAGCTATGGAGG
aactcac putative branch site (score: 2)
cttttgtc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctttccttgctttgtctgataactcacttttgtcgtaacagGCATTCGCTGAAATACCCGATCTAACTGTGTGGTATGGTCCTGATTCCTACATGGGTGCCAATCTTGCGGTATTGTTTCAGCAACTTGCAGCTATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG