1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaaataagcgaaaaagacccaacaaaaacaaaacatttgcttgatttccttcatatcgtttacctctctattaaagttgtctctggttgacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTGTCCGGAAAGAAGTCATTAAACAG
species | Selaginella moellendorffii |
transcript | EFJ31563 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTEST: gi|169036220|gb|FE445689.1|FE445689
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTEST: gi|169061695|gb|FE469885.1|FE469885
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
atttccttcatatcgtttacctctctattaaagttgtctctggttgacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTGTCCGGAAAGAAGTCATTAAACAG
ggttgac putative branch site (score: 6)
tattaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaataagcgaaaaagacccaacaaaaacaaaacatttgcttgatttccttcatatcgtttacctctctattaaagttgtctctggttgacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTGTCCGGAAAGAAGTCATTAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
aaaaaat
- - - - - - aaaaaga
- - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - - - - tttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtctc