1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcctttttctccagagttttctttcttcagacttgttttctccttgaacaatgttcttaacgtccaggaaagATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGGGGGAAATCGATACGAG
species | Selaginella moellendorffii |
transcript | EFJ31356 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGCGATTTACGATAGAATGGAGCTCTTGGACTCGGACAAAGCAGCTTCCT ATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGGEST: gi|169074184|gb|FE482403.1|FE482403
genomic: AGCGATTTACGATAGAATGGAGCTCTTGGACTCGGACAAAGCAGCTTCCTgtatcctttt ... tccaggaaagATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGG
EST: AGCGATTTACGATAGAATGGAGCTCTTGGACTCGGACAAAGCAGCTTCCT ATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGG
genomic: AGCGATTTACGATAGAATGGAGCTCTTGGACTCGGACAAAGCAGCTTCCTgtatcctttt ... tccaggaaagATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGG
tttctttcttcagacttgttttctccttgaacaatgttcttaacgtccaggaaagATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGGGGGAAATCGATACGAG
gttcttaac putative branch site
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttttctccagagttttctttcttcagacttgttttctccttgaacaatgttcttaacgtccaggaaagATATTGCGAGCCTTCAGCAGGAGGATGGATCTTTTGCTGGAGACGAGTGGGGGGAAATCGATACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA