1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagctatccaactctcgaacgcaaacacgacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
species | Selaginella moellendorffii |
transcript | EFJ31006 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGNGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAEST: gi|169099377|gb|FE500993.1|FE500993
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
EST: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT ACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
genomic: ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatc ... tttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACA
gacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
tgctgac putative branch site (score: 29)
ttctcgtttct putative PPT
aagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatccaactctcgaacgcaaacacgacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcagACACGATGATGAAGTTTGCATGCTTTGAGGCCACGGTCGAGGCGCTTTACAAGTACGTTATTCCCAAGCCCAAGGACGAGTGTAGCAAGGTGGAGCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT