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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaagcttttagctgtatataaactttcttttagtttccttcacaccagtgatactcactttgagaaaactctgagattctcttgcagCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTT

Basic information

species Selaginella moellendorffii
transcript EFJ30923
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30923 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S80_153V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------------------------gtaagcaaaagcttttagctgtatataaactttcttttagtttcctt-cacaccagtgatactcactttgagaaaactc-tgagattctcttgcagCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTT
                                                        ||| | |   |   |     |  |||| |         || |||    |     |   ||  |  |  |||  |   ||  |   ||     |||| |||||||| ||||||||||| ||||| |||||||| |||||  ||||||| |||||||||||||| || ||||| |||||||| || ||  | 
gtgagatccgcaaacactaaatgattgaacaaacgtagacttaaaggatattctttgtatg-atttgtactggaacgactatatatgccgcgggaggttctgagcggctgaactattttttcactgattagtttcacgttgttgctccgcagGTTTGGAACAGATTTTGCTGCGATTGCTAAGTTCGTGGGGACTCGAAGCTCAACTCAAGTTCGCACACATGCGCAAAAATACTATGCAAAGTTG

upper sequence: EFJ30923 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S87_134V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------------------------gtaagcaaaagcttttagctgtatataaactttcttttagtttccttcacaccagtgatac-tcact--ttgagaaaactctgagattctcttgcagCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTT
                                                         | |  | |||   ||   |||| | || ||       |  |     || |  |    ||  | |||  || |  | || |||  | ||    |||| |||||||| ||||||||||| ||||| |||||||| || ||  | || ||||| |||||||||||||| ||||| ||||||||||| ||  | 
gtgagatccactagtaccatgcaaaaaaaaacaagaagattcggccgaagatttacattactacaagagattga-tgtaaaaaagctgctcaggatctgtagacaaatgaactgtatataactgattcattacaccctgttaatcc---gcagATTTGGAACAGATTTTGCTGCTATTGCCAAGTTCGTAGGCACACGCAGTTCCACCCAAGTTCGCACTCATGCGCAAAAATACTACGCGAAGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttccttcacaccagtgatactcactttgagaaaactctgagattctcttgcagCTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTT
                   tactcac  putative branch site (score: 1)
                                            ttctcttgc  putative PPT