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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttcctgtttgttttgctcgagcggatataaacttaagacaagtttttgttttctatctggcagGCTGGTGGTATGGAATTGTTGGTCACTCTGATTCATGTTCCAACGCCGGGAATAATAGCAGTCGTCAGCATTGTTCTTGCCAGAGTGACA

Basic information

species Selaginella moellendorffii
transcript EFJ30849
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30849 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 3'ss of exon 3
--------------------------------------------------------------------------gtatg-tgttcctgtttg-ttttgctcgagcggatataaacttaagacaa-gtttttgttt---------tctatctggcagGCTGGTGGTATGGAATTGTTGGTCACTCTGATTCATGTTCCAACGCCGGGAATAATAGCAGTCGTCAGCATTGTTCTTGCCAGAGTGACA
                                                                           |||| |  || | | || |  || |   | | || | | |    ||||  || ||  ||          | | | |||||||||||||||||||| ||||||| ||||  || ||||||      |  || | | |   |  | ||| |  |  |  | |           
gtatgttcccgagcacccaacaacgcaaatgctttggacagtgctagaagaaccaataaacatttccatatgggatatgctaatcttatctgatagtgatgaggagtattttaccagtggacagtgtgttcattcatgtgttgctatgtttggcagGCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGT------GATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG---------

upper sequence: EFJ30849 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G130348_T01 (Zea mays), 3'ss of exon 3
------------------------------------------------------------------gtatgtgttcctgtttgttttgctcgagcggata-taaact-taagacaagtttttgttttc-tatctggcagGCTGGTGGTATGGAATTGTTGGTCACTCTGATTCATGTTCCAACGCCGGGAATAATAGCAGTCGTCAGCATTGTTCTTGCCAGAGTGACA
                                                                  |     |    | ||| ||||  || || ||||| |    | | |  || |   ||   | | | | |||||||||||||||||||| ||||||| ||||  || ||||||      |  || |   |   |  | ||| |     |  | |           
gtatgttcccgagccacccagcaacgcttgcttttaatgcattgatgctaatcctatccgatagtggctgaggagtattttttttttaatc-agtggatagtgtgttctcattcatgcacttccatgcatgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGT------GATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG---------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgctcgagcggatataaacttaagacaagtttttgttttctatctggcagGCTGGTGGTATGGAATTGTTGGTCACTCTGATTCATGTTCCAACGCCGGGAATAATAGCAGTCGTCAGCATTGTTCTTGCCAGAGTGACA
                                  tttttgttttctatct  CT-rich tract
                atataaacttaaga  TA-rich tract