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gtaagatattcttccttatacttatttttttcttatatcgttcgggattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGAATTTATCCAAAAACGAGATGGATATCCAAG
species | Selaginella moellendorffii |
transcript | EFJ30498 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169046058|gb|FE453955.1|FE453955
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169054115|gb|FE462350.1|FE462350
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169056997|gb|FE466224.1|FE466224
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169100333|gb|FE501130.1|FE501130
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169098675|gb|FE497249.1|FE497249
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169047621|gb|FE455205.1|FE455205
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: GCTGTTGCGAGAGCCAAGCACTACCTCTNCA-TGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGANGTTTGCEST: gi|169111758|gb|FE511957.1|FE511957
genomic: GCTGTTGCGAGAGCCAAGCACTACCTCT-CAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGC
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169067097|gb|FE474475.1|FE474475
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169045644|gb|FE452605.1|FE452605
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169042323|gb|FE452871.1|FE452871
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169057473|gb|FE465777.1|FE465777
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169036858|gb|FE444975.1|FE444975
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169097504|gb|FE497946.1|FE497946
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169106601|gb|FE504636.1|FE504636
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGEST: gi|169065718|gb|FE476206.1|FE476206
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
EST: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTG GTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
genomic: CGCTGTTGCGAGAGCCAAGCACTACCTCTCAATGACCTCTGGTGGTGTTGgtaagatatt ... gattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAG
gtaagatattcttccttatacttatttttttcttatatcgttcgggattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGAATTTATCCAAAAACGAGATGGATATCCAAG
ttccttatacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatattcttccttatacttatttttttcttatatcgttcgggattgtctagGTGCGTACAGCGACTCGAGAGGTTTGCCAGGAGTGAGGCAAGAGGTAGCAGAATTTATCCAAAAACGAGATGGATATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA