1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaccttctcccaggagcttatagacaagcattctctgtcctaaaggtaaaatgttgatggtgctagagaccgagcgagctttcggtttcttatcatgcagGGGTTCTCAAGTTCTTCTCCAGCTTCCTTTGGAAAAATGTGGCACACAG
species | Selaginella moellendorffii |
transcript | EFJ29746 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gtaaaatgttgatggtgctagagaccgagcgagctttcggtttcttatcatgcagGGGTTCTCAAGTTCTTCTCCAGCTTCCTTTGGAAAAATGTGGCACACAG
tgttgat putative branch site (score: 4)
tttcttatc putative PPT
tttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccttctcccaggagcttatagacaagcattctctgtcctaaaggtaaaatgttgatggtgctagagaccgagcgagctttcggtttcttatcatgcagGGGTTCTCAAGTTCTTCTCCAGCTTCCTTTGGAAAAATGTGGCACACAG
- ccttctc
- - - - - - ggagctt
- - - - - - - - - -atagacaa
- - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - aaggtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttct