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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccccgaacggggtgaaggtgagttgctagaaacagagtttccttcctctcattttctatatttcagTCACCCCTTTCGAGTTTCGGGCCTTGGAAGTAGCACTGGAAGCGATTTGCAGCTTTTTGGACGCACGAACAACCGAGTTGGAAACTTCGGCATACCCGGC

Basic information

species Selaginella moellendorffii
transcript EFJ29467
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29467 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S76_98V6.2 (Physcomitrella patens), 3'ss of exon 4
----------------------------gtgaccccgaacggggtgaag--gtgagttgctagaaacagagtttccttcctctcattttctatatttcagTCACCCCTTTCGAGTTTCGGGCCTTGGAAGTAGCACTGGAAGCGATTTGCAGCTTTTTGGACGCACGAACAACCGAGTTGGAAACTTCGGCATACCCGGC
                            || |     |      |  |   ||  || |   |||  |||  |||   |           | | |  |||   | || || |||||||||||  |||| |||||  ||||||| |||||||||||||| || ||||| || || |||||||| ||    ||||| || ||
acactgacatcttccgtgtaaatgataagttatgttaattcctttcgaattgtatgtggtacgaatgagaagttctaacagagttaacgttgtctggcagCTCCTCCGTTTGAGTTTCGGGCGCTGGAGGTAGCTTTGGAAGCTATTTGCAGCTTTTTAGATGCACGCACCACTGAGTTGGAGACAAATGCATATCCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaggtgagttgctagaaacagagtttccttcctctcattttctatatttcagTCACCCCTTTCGAGTTTCGGGCCTTGGAAGTAGCACTGGAAGCGATTTGCAGCTTTTTGGACGCACGAACAACCGAGTTGGAAACTTCGGCATACCCGGC
                          tttccttcctctcatt  CT-rich tract
                                     tcattttctatattt  TA-rich tract