1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggacagagctcgcatccgcaagttccttttccttttcgttatgcttctccagtgcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAAAGAGAATGGAGGTACGGCTCAGGCACCTGGGCATTCACGTAAAGAGCAT
species | Selaginella moellendorffii |
transcript | EFJ27893 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAG AGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAAEST: gi|169094026|gb|FE494030.1|FE494030
genomic: ACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAGgtaggacaga ... gcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAA
EST: TCCAACTTTTCTCTACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAG AGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAAEST: gi|169094025|gb|FE494029.1|FE494029
genomic: TCCAACTTTTCTCTACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAGgtaggacaga ... gcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAA
EST: TCCAACTTTTCTTTACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAG AGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAA
genomic: TCCAACTTTTCTCTACGCCATGCCGTTCTCGTCAACCAAGATCTTTCTAGgtaggacaga ... gcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAA
ctcgcatccgcaagttccttttccttttcgttatgcttctccagtgcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAAAGAGAATGGAGGTACGGCTCAGGCACCTGGGCATTCACGTAAAGAGCAT
tgctttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggacagagctcgcatccgcaagttccttttccttttcgttatgcttctccagtgcttttgcagAGGAGACTTCTCTAGTAGCGAGACCCGGCGTGCCCCTCAAAGAGATACAAAAGAGAATGGAGGTACGGCTCAGGCACCTGGGCATTCACGTAAAGAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA