1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgcttactgtcgccttctgtcgtatcttcttcgccttcttctgggctcaacaagccttgcccttcaaaaagcatgacatctactccatttcttaagaagATTTATGATGCTTGGCGGCATGGCACCAATCTTTCCCATAAACTATGTCCAGCTCCTCAGCACCACCCTTAGAGACAGCGAACAATCTTTGGGAGTGTGC
species | Selaginella moellendorffii |
transcript | EFJ26150 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gctcaacaagccttgcccttcaaaaagcatgacatctactccatttcttaagaagATTTATGATGCTTGGCGGCATGGCACCAATCTTTCCCATAAACTATGTCCAGCTCCTCAGCACCACCCTTAGAGACAGCGAACAATCTTTGGGAGTGTGC
tctactccatttctt CT-rich tract
atttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcttactgtcgccttctgtcgtatcttcttcgccttcttctgggctcaacaagccttgcccttcaaaaagcatgacatctactccatttcttaagaagATTTATGATGCTTGGCGGCATGGCACCAATCTTTCCCATAAACTATGTCCAGCTCCTCAGCACCACCCTTAGAGACAGCGAACAATCTTTGGGAGTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-tgcttac
- - - - - - - -ttctgtc
- - - - - - - - - - - - -tcttctt
- - - - - - - - - - - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctactc