1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtctcgtgtcacttggattgctctcttctttcatcgaagaactaggattgctccgaagaactagagtcttggattctccggggttttgcttacgaaagttttggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGAGCCACTAAAAAAAAAGAGGAAATAGTCTATAACGTTTGCCGCCGCCAT
species | Selaginella moellendorffii |
transcript | EFJ26130 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGEST: gi|70669757|gb|DN838334.1|DN838334
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGEST: gi|169026996|gb|FE434295.1|FE434295
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGEST: gi|169029717|gb|FE437388.1|FE437388
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGEST: gi|169097025|gb|FE498416.1|FE498416
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGEST: gi|169029716|gb|FE437387.1|FE437387
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
EST: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG GACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
genomic: CCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGGgtatgtctcg ... ggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAG
gaactagagtcttggattctccggggttttgcttacgaaagttttggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGAGCCACTAAAAAAAAAGAGGAAATAGTCTATAACGTTTGCCGCCGCCAT
tgcttac putative branch site (score: 41)
ttctcc putative PPT
aaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcgtgtcacttggattgctctcttctttcatcgaagaactaggattgctccgaagaactagagtcttggattctccggggttttgcttacgaaagttttggttctccagGACTATGGCGAGGAGACTGAAGGGCTAAATGTGATCCAAGAGTATGTCAAGAGCCACTAAAAAAAAAGAGGAAATAGTCTATAACGTTTGCCGCCGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA