1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatttggcttgaagaactctctgatctcaccgtagaaacacacacggcgatggcacacagacctcacgtctgtgtcattgctcgccatagatatactgtcggcgattgtctcactcatctctctctctctctttctcactcacaaactttgtctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTTCTCGGGGAAAGCAGTGACGGAGGATCTCGTCCCCAACGATTTCCGCAAG
species | Selaginella moellendorffii |
transcript | EFJ26109 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAG AGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTTEST: gi|169067153|gb|FE474921.1|FE474921
genomic: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAGgtatttggct ... tctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTT
EST: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAG AGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGAGGATTCTTEST: gi|169074921|gb|FE482776.1|FE482776
genomic: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAGgtatttggct ... tctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTT
EST: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAG AGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGAGGATTCTTEST: gi|169071668|gb|FE477097.1|FE477097
genomic: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAGgtatttggct ... tctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTT
EST: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAG AGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTT
genomic: TGGTCTCTTTGGGTACGAGACGTGGAGGACGAGATCATCCCGACTTGCAGgtatttggct ... tctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTT
tgtctcactcatctctctctctctctttctcactcacaaactttgtctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTTCTCGGGGAAAGCAGTGACGGAGGATCTCGTCCCCAACGATTTCCGCAAG
cactcac putative branch site (score: 17)
ctttgtctctttc putative PPT
aaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttggcttgaagaactctctgatctcaccgtagaaacacacacggcgatggcacacagacctcacgtctgtgtcattgctcgccatagatatactgtcggcgattgtctcactcatctctctctctctctttctcactcacaaactttgtctctttcagAGAGCTCGGGATCGGGATCGTCGCTTATGGCCCGCTGGGGCGGGGATTCTTCTCGGGGAAAGCAGTGACGGAGGATCTCGTCCCCAACGATTTCCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT