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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgctgttttttttttctttgcgcgttgttaactgcgcagtttgtagATACTCAAGGAGGAAATTCACGACCTCCTTGACACGAACCCTTCCCAGACTGTCAAACAAGAGCCATTTGTTGGTGTCTTTGGCGTCAAGCCTTGCTCAC

Basic information

species Selaginella moellendorffii
transcript EFJ26093
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26093 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------gtaacttgctgttttttttttctttgcgcgttgttaactgcgcagtttgtagATACTCAAGGAGGAAATTCACGACCTCCTTGACACGAACCCTTCCCAGACTGT---CAAACAAGAGCCATTTGTTGGTGTCTTTGGCGTCAAGCCTTGCTCAC
                                                       |||       ||  || |  | ||   | |||||  | ||     |||||||||||||||||||||||||||| || || ||  | || ||| |    || |    || |   | |  |   |||     | || ||   | ||    | |  
aatttaatacgtcgtcgtaatttgtttacaccaagtttttgaatccaatgatttcaacaccaatattgattatattatgtctggtgttatttacg-----tgtagATACTCAAGGAGGAAATTCACGATCTTCTGGATCCAAATCCTCCATCAACAGAGTACATATTTGGGGGAGG-GTTAAAAGCATTAGCTGTAGGCAAACCAC--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacttgctgttttttttttctttgcgcgttgttaactgcgcagtttgtagATACTCAAGGAGGAAATTCACGACCTCCTTGACACGAACCCTTCCCAGACTGTCAAACAAGAGCCATTTGTTGGTGTCTTTGGCGTCAAGCCTTGCTCAC
                                  tgttaac  putative branch site (score: 2)
               tgttttttttttcttt  TA-rich tract