1 5' 3' | 2 5' 3' | 3 5' 3' |
...tactctttgttgttcctcacaactttttgcctttactcccactcacatccatcgtttctgctcgttgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTGGC
species | Selaginella moellendorffii |
transcript | EFJ26015 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
catccatcgtttctgctcgttgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTGGC
ttctcac putative branch site (score: 16)
tttctgctcgttgttt CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactctttgttgttcctcacaactttttgcctttactcccactcacatccatcgtttctgctcgttgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTGGC
- -tctttgt
- - - - - tgttcct
- - - - - - - - - - - -tttttgc
- - - - - - - - - - - - - - - -tttactc