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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcacttacttttccttttgttaaatggtttttattcacttggtgcggtggtctttgcagGCTCTTGGATGCCTTTTGTATAGACTATGTTTCTTTAAGTCTGCATTTGACGGGGAATCGAAGCTACAAATCCTGAATGGAAACTATCGAATTCCAGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ25956
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25956 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: LOC_Os09g10720.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------------------gttg-gtcacttacttttccttttgttaaatggtttttattcacttggtgcggtggtctttgcagGCTCTTGGATGCCTTTTGTATAGACTATGTTTCTTTAAGTCTGCATTTGACGGGGAATCGAAGCTACAAATCCTGAATGGAAACTATCGAATTCCAGAAG
                                                                      ||   | |       ||   | |  | | |  ||  |  |   ||     | |  |||||||||||||||||||| ||  |||||||| | || | ||| || || |||||||| || ||||| ||||| || || || |||||||||||||| || |||||  
gtaaatcctctctgtactaattgtacatcaatattatgtttttaattgaaagttgattgaatggtacaaattatattatacgtagttgtatcttattactaattaatgattttttaacttgctattctttgcagGCTCTTGGATGTCTCCTGTATAGAATCTGCTACTTAAAATCAGCATTTGATGGAGAATCAAAGCTCCAGATACTCAATGGAAACTATCGTATCCCAGAGT

upper sequence: EFJ25956 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------gttggtcacttacttttccttttgttaa--atggtttttattc--------acttggtgcggtggtctttgcagGCTCTTGGATGCCTTTTGTATAGACTATGTTTCTTTAAGTCTGCATTTGACGGGGAATCGAAGCTACAAATCCTGAATGGAAACTATCGAATTCCAGAAG
                                      | |  | | || || |||     |||     || |||||| |         || ||         | ||||||||| ||||| |||||  | | | |  |||| | ||| || ||||||||||| || ||||| ||| |||||||| | ||||||||||| || ||||||||| 
gtaagtcagttatactttatttttgttcaatgagtctgggttatgatttgctattcaagaagttttctgtgctttttaatacaaccaaaacctgaaattcatctttttgcagGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGATGGTGAATCAAAGTTACAAATCTTAAATGGAAACTACCGCATTCCAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttttccttttgttaaatggtttttattcacttggtgcggtggtctttgcagGCTCTTGGATGCCTTTTGTATAGACTATGTTTCTTTAAGTCTGCATTTGACGGGGAATCGAAGCTACAAATCCTGAATGGAAACTATCGAATTCCAGAAG
 cacttac  putative branch site (score: 2)
                                              tctttgc  putative PPT
          ttttgttaaatggttt  TA-rich tract