1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggaaagtttgttcttggccagaaaggtggctcactttctttcttttttttcttcttgtcctgttacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAATTCCAGACGCTCTCAAG
species | Selaginella moellendorffii |
transcript | EFJ25898 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAG GTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAEST: gi|169050522|gb|FE459616.1|FE459616
genomic: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAGgtaggaaagt ... tacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAA
EST: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAG GTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAEST: gi|169049020|gb|FE454980.1|FE454980
genomic: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAGgtaggaaagt ... tacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAA
EST: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAG GTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAEST: gi|169025619|gb|FE436532.1|FE436532
genomic: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAGgtaggaaagt ... tacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAA
EST: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAG GTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAA
genomic: CGATGCCCGGTTGCTTTCGACTGGGATGGAAGCATGGATTGATCGACGAGgtaggaaagt ... tacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAA
cagaaaggtggctcactttctttcttttttttcttcttgtcctgttacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAATTCCAGACGCTCTCAAG
ggctcac putative branch site (score: 20)
ctttctttcttttttt CT-rich tract
tttctttctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaagtttgttcttggccagaaaggtggctcactttctttcttttttttcttcttgtcctgttacttcccagGTTTACAAGGCTCGAGATGTTGGAGTGAACAGCGTTGTTCTCTTTCCCAAAATTCCAGACGCTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG