1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagatctctcatacttttccttttggaagacactcacccaacttcaattcactttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTGAGCGTGATGCACCCAGATGGTAACCGGCCCGTGGCTCCAGTTGAGCTCT
species | Selaginella moellendorffii |
transcript | EFJ25021 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAG GGAGTGTCAGCTGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTGEST: gi|169023244|gb|FE429998.1|FE429998
genomic: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAGgtgagatctc ... actttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTG
EST: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAG GGAGTGTCAGCTGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTGEST: gi|169116215|gb|FE517162.1|FE517162
genomic: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAGgtgagatctc ... actttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTG
EST: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAG GGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTG
genomic: AGCTCAGGCTCGACATGGGAGACAGCATCCAAGGCAAAGGCATGATACAGgtgagatctc ... actttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTG
ctctcatacttttccttttggaagacactcacccaacttcaattcactttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTGAGCGTGATGCACCCAGATGGTAACCGGCCCGTGGCTCCAGTTGAGCTCT
cactcac putative branch site (score: 35)
ttcacttt putative PPT
atactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatctctcatacttttccttttggaagacactcacccaacttcaattcactttggcagGGAGTGTCAGCCGTGGAAGCTTTTCATGAATTGCTCAGACAACCAAGCCTGAGCGTGATGCACCCAGATGGTAACCGGCCCGTGGCTCCAGTTGAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG