1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgatcgacatcgtttgttcttgttcttaaacttccttttcttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACTGGAATGAAGATATCTGTCCATCAAATCGGCCCTGGAATGATTCAACAG
species | Selaginella moellendorffii |
transcript | EFJ24912 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169062697|gb|FE470783.1|FE470783
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169050973|gb|FE458143.1|FE458143
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169104151|gb|FE507140.1|FE507140
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169081099|gb|FE489245.1|FE489245
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169112344|gb|FE512920.1|FE512920
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169047451|gb|FE455646.1|FE455646
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169087137|gb|FE496204.1|FE496204
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACEST: gi|169113323|gb|FE515274.1|FE515274
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
EST: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGG AAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
genomic: TCAAAGAAGCTTACATTGTCACGGAACATACTTTGTCCAAGCTGCAAAGGgtatgatcga ... ttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCAC
gtatgatcgacatcgtttgttcttgttcttaaacttccttttcttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACTGGAATGAAGATATCTGTCCATCAAATCGGCCCTGGAATGATTCAACAG
ttcttgttcttaaact CT-rich tract
ttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcgacatcgtttgttcttgttcttaaacttccttttcttcaatgcagAAAGGGCTCGAAGTCTGGGAATTCTTCAAAGTGTACCGGTTGCCGTGGCACTGGAATGAAGATATCTGTCCATCAAATCGGCCCTGGAATGATTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA