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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttggaaatcacatcattttgtgcatgatcatagtacgctttttctctagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA

Basic information

species Selaginella moellendorffii
transcript EFJ24833
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24833 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: LOC_Os03g05660.1 (Oryza sativa), 3'ss of exon 3
--------------------------------------------gtacttggaaat-cacatcattttgtgcatgatcatagt-acgctttttctc-tagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA
                                             |||   || || ||     ||   ||    || ||  | | |  |  |||   |||   || ||||| |||||||| |||  ||| ||||| ||||||||||||||||| || ||||| || || || ||||| ||||||||| | || || || 
ctacctgaggatgttagtttatttcatgatatggttttgagatgatacactgatatacatgctcttcactgacctataatgcttatgaatggtctggcagGAAGGTAATTCATACTGTGGGCCCTAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGCCACTGCTACAGGTCTTGTTTGGAACTTCTC

upper sequence: EFJ24833 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G100707_T01 (Zea mays), 3'ss of exon 3
---------------------------gtacttggaa---atcacatca----ttttgtgcatga--------tca-----tagtacgctttttctctagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA
                            | |||| ||   |||||||||    |||  |||   |        |||     || |   ||  || | ||||   ||||| || |||||||| ||   ||| ||||| ||||||||||||||||| || ||||| || || || ||||| ||||||||||| || || || 
gtttgaaccttgatatttgagaatcatttgcttgaaacatatcacatcagaactttaatgctcaacgttaagctcaaaagttaattatctggttatgtagGAAGGTCATCCATACTGTGGGCCCAAAATATGCTGTAAAGTATCACACAGCTGCAGAGAATGCGCTTAGCCACTGCTACAGGTCTTGTCTAGAACTGCTC

upper sequence: EFJ24833 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM5G836588_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------gtacttggaaatcacatcattttgtgcatgatcatagtac--gctttttctctagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA
                                             ||  |||    |    | | ||     | |||    |||     |  || |  |||   ||||| || || ||||| ||   ||| ||||| ||||||||||||||||| || ||||| || ||||| |||||| |||| ||  | || || || 
tagcggttgaacactcaaagatttactcatccaacatgttgttctgtggttgtctgtattcttagttatgctaagatgcatgtatcaattgattatgcagGAAGGTCATCCATACCGTGGGCCCCAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGTCACTGCTATCGGTCCTGCTTGGAACTGCTC

upper sequence: EFJ24833 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------gtacttggaaatcacatcattttgtgcatgatcatagtacgctttttctctagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA
                                               || | |      |  |            || |  | ||  |  |||| |  ||| | || || || || || || ||    || || || |||||||| ||||||||||| ||||| || ||||| |||||||| |||||||| || || || 
ataccaagcattctgtgcgactttaatatggactgtgaaatagatttgtgccttagtccccaactcaaaaaaatgtgttttttgtttgtcttttgttcagGAGGGTTATCCATACAGTAGGACCCAAGTATGCAGTAAAGTATCATACAGCTGCTGAGAATGCTCTAAGTCACTGCTATAGATCTTGTCTGGAACTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacttggaaatcacatcattttgtgcatgatcatagtacgctttttctctagGCGTGTCATTCACACTGTGGGTCCTCGATACGCTGTGAAGTATCACACAGCTGCTGAAAATGCCCTGAGTCATTGCTATAGGTCTTGTCTTGAGCTCCTA
                                        tacgctttttctct  CT-rich tract
                 atcatttt  TA-rich tract