1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgatcgttcacgagcaaaactttcgaaaaaaagtcgattttttctctgaaaacttggttgtgatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGTGAACACGCTGCTGCGAGATATAATTCGCAACCGCTGGGCCGAAAAGACC
species | Selaginella moellendorffii |
transcript | EFJ24654 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGGGACTGCTCTACATGAACAGCTACNAGCGGCTTATACCTGGATACAG TTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGEST: gi|169109104|gb|FE511306.1|FE511306
genomic: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAGgtgatcgttc ... gatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACG
EST: ACGGGACTGCTCTACCTGAACAGCTACAAGCGGCTTATACCTGGATACAG TTTCCTGCCAACACGGGAGAATCTCCACCTCAGGCGCAGTGAGCAATACGTEST: gi|169099804|gb|FE500809.1|FE500809
genomic: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAGgtgatcgttc ... gatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGT
EST: ACGGGACTGCTCTACCTGAACAGCTACAAGCGGCTTATACCTGGATACAG TTTCCTGCCAACACGGGAGAATCTCCACCTCAGGCGCAGTGAGCAATACGTEST: gi|169032597|gb|FE437728.1|FE437728
genomic: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAGgtgatcgttc ... gatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGT
EST: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAG TTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGTEST: gi|169064856|gb|FE475552.1|FE475552
genomic: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAGgtgatcgttc ... gatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGT
EST: ACGGGACTGCTCTACCTGAACAGCTACAAGCGGCTTATACCTGGATACAG TTTCCTGCCAACACGGGAGAATCTCCACCTCAGGCGCAGTGAGCAATACGT
genomic: ACGGGACTGCTCTACATGAACAGCTACAAGCGGCTTATACCTGGATACAGgtgatcgttc ... gatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGT
aaactttcgaaaaaaagtcgattttttctctgaaaacttggttgtgatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGTGAACACGCTGCTGCGAGATATAATTCGCAACCGCTGGGCCGAAAAGACC
aaaaaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcgttcacgagcaaaactttcgaaaaaaagtcgattttttctctgaaaacttggttgtgatgaaatagTTTCCTGCCAACACGGGAGAATCTCCACCTCCGGCGCAGTGAGCAATACGTGAACACGCTGCTGCGAGATATAATTCGCAACCGCTGGGCCGAAAAGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC