1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtttctcatttttccaggcagaaagttccgtgttttgatcttgaagcattggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGACTCTCGGAAGCGAGTGCCAACACCATCCGGCGAGCTCATGTGGTGCATC
species | Selaginella moellendorffii |
transcript | EFJ24149 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169064038|gb|FE472225.1|FE472225
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169052709|gb|FE463531.1|FE463531
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169060887|gb|FE469282.1|FE469282
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169100363|gb|FE501160.1|FE501160
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169033793|gb|FE442137.1|FE442137
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCNTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169100364|gb|FE501161.1|FE501161
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169052708|gb|FE463530.1|FE463530
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGAEST: gi|169060886|gb|FE469281.1|FE469281
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
EST: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACG ATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
genomic: ATCTTTACTATCAGCATCGCGTCGATCCTGAGGTTCCCATCGAAGAAACGgcaagtttct ... ggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGA
tcatttttccaggcagaaagttccgtgttttgatcttgaagcattggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGACTCTCGGAAGCGAGTGCCAACACCATCCGGCGAGCTCATGTGGTGCATC
ttttgat putative branch site (score: 10)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtttctcatttttccaggcagaaagttccgtgttttgatcttgaagcattggctttgtagATGGGTGAGCTCAAGAAGCTCGTCCAAGAAGGGAAGATCAAGTTCATTGGACTCTCGGAAGCGAGTGCCAACACCATCCGGCGAGCTCATGTGGTGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA