1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgatctcctaattcttgttctatctgtccggggtattaatgttacttatgccagTCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTGAGACTGTTTTTCGACCACAACATTTACAAGCTTCCTCACAAAGAAGTCC
species | Selaginella moellendorffii |
transcript | EFJ23893 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCTTGCGCTTGCGGAGCTCAACATCAAGTACTTGAGCCCTTTGAAA TCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTGEST: gi|169042067|gb|FE448520.1|FE448520
genomic: CTGTGCTTGCGCTTGCGGAGCTCAACATCAAGTACTTGAGCCCTTTGAAAgtatgatctc ... cttatgccagTCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTG
EST: CTGTGCTTGCGCTTGCGGAGCTCAACATCAAGTACTTGAGCCCTTTGAAA TCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTG
genomic: CTGTGCTTGCGCTTGCGGAGCTCAACATCAAGTACTTGAGCCCTTTGAAAgtatgatctc ... cttatgccagTCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTG
atgatctcctaattcttgttctatctgtccggggtattaatgttacttatgccagTCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTGAGACTGTTTTTCGACCACAACATTTACAAGCTTCCTCACAAAGAAGTCC
tattaat putative branch site (score: 1)
tattaatgttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctcctaattcttgttctatctgtccggggtattaatgttacttatgccagTCAGGGGATGTTTTCCTTGTTACGGCTAGGATAACTGGATCGTCGGCTGTGAGACTGTTTTTCGACCACAACATTTACAAGCTTCCTCACAAAGAAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT