1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagagcaatttaattccatgttctcgtttctaagttctttcttcgttttttttacaagCTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGAGGCCAAGATGCTCAAAGATCCCCGAAGGCTCTACACTCCCGGAAGAATC
species | Selaginella moellendorffii |
transcript | EFJ23796 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCAGGACTGCGACGCCTCTAGAGGACATGTTCAAGTCCCTCTTCTG CTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGAEST: gi|169043819|gb|FE453810.1|FE453810
genomic: CTTCCCAGGACTGCGACGCCTCTAGAGGACATGTTCAAGTCCCTCTTCTGgtgagagcaa ... tttttacaagCTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGA
EST: CTTCCCAGGACTGCGACGCCTCTAGAGGACATGTTCAAGTCCCTCTTCTG CTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGA
genomic: CTTCCCAGGACTGCGACGCCTCTAGAGGACATGTTCAAGTCCCTCTTCTGgtgagagcaa ... tttttacaagCTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGA
agcaatttaattccatgttctcgtttctaagttctttcttcgttttttttacaagCTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGAGGCCAAGATGCTCAAAGATCCCCGAAGGCTCTACACTCCCGGAAGAATC
atttaat putative branch site (score: 14)
tttctaagttctttct putative PPT
ttttttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagcaatttaattccatgttctcgtttctaagttctttcttcgttttttttacaagCTTGCCGTGCTTGCTTTGCATCATTTGCGTTCGAGACACCTTCCTCTCGGAGGCCAAGATGCTCAAAGATCCCCGAAGGCTCTACACTCCCGGAAGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA