1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttgacactctttgtatatactaaaaaccctgaccagcggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTTAAAAAAGCCATGTCTATGGACAACTCCCCAAGATCACCTCTTCAGGAAC
species | Selaginella moellendorffii |
transcript | EFJ23755 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTTTAGTCAAGAAAACAGGCTTEST: gi|169036630|gb|FE446554.1|FE446554
genomic: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
EST: GAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTTEST: gi|169103281|gb|FE507310.1|FE507310
genomic: GAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
EST: ATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTTTAGTCAAGAAAACAGGCTTEST: gi|169110117|gb|FE513358.1|FE513358
genomic: ATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
EST: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTTEST: gi|169103282|gb|FE507311.1|FE507311
genomic: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
EST: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTTTAGTCAAGAAAACAGGCTTEST: gi|169110116|gb|FE513357.1|FE513357
genomic: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
EST: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCT CATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
genomic: TGGAGTCTGTTCGAAAGTCATTGGTCCATACATTGCAGCTGGATAATCCTgtaagttgac ... ggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTT
gtaagttgacactctttgtatatactaaaaaccctgaccagcggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTTAAAAAAGCCATGTCTATGGACAACTCCCCAAGATCACCTCTTCAGGAAC
tttgtatatactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacactctttgtatatactaaaaaccctgaccagcggcattatagCATCTACTCGATACCGCAGATGAAAAATCGTCTAGTCAAGAAAACAGGCTTAAAAAAGCCATGTCTATGGACAACTCCCCAAGATCACCTCTTCAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA