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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgcttacatgattctggcagcttatgtttgattctcctccagGTGGATTTCAACCTTCCCGAGCGTTTCGATCTTACATACGTGGATCCCAGTCAGGCCAGAAAGCAGCCCATCATGATCCATAGGGCGATATTTGGATCCA

Basic information

species Selaginella moellendorffii
transcript EFJ23451
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030648|gb|FE438748.1|FE438748
EST:     TCAAGATTGAGGATGCTATTGGCCGCAAGTGGCAATGTTCGACAATCCAG                         GTGGATTTCAACCTTCCCGAGCGTTTCGATCTTACATACGTGGATCCCAGT
genomic: TCAAGATTGAGGATGCTATTGGCCGCAAGTGGCAATGTTCGACAATCCAGgtaacgctta ... tctcctccagGTGGATTTCAACCTTCCCGAGCGTTTCGATCTTACATACGTGGATCCCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacgcttacatgattctggcagcttatgtttgattctcctccagGTGGATTTCAACCTTCCCGAGCGTTTCGATCTTACATACGTGGATCCCAGTCAGGCCAGAAAGCAGCCCATCATGATCCATAGGGCGATATTTGGATCCA
                                               tttgattctcctcc  CT-rich tract
                                  ttatgttt  TA-rich tract