1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgactctcctattttcttttatctttcccattccctgatgtgtgttctcttttgttctttctctttttcgcgtgtggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGTCACCGGGAAGAAGCAAGCGCAGGAGAAAACAAACGGCAACAGCAGCTCC
species | Selaginella moellendorffii |
transcript | EFJ21827 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAG GAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGTEST: gi|169059495|gb|FE468521.1|FE468521
genomic: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAGgtgactctcc ... tggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGT
EST: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAG GAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGTEST: gi|169079616|gb|FE488152.1|FE488152
genomic: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAGgtgactctcc ... tggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGT
EST: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAG GAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGT
genomic: TTAATTGCAGTGGCTTTTTTCTATGGTGCCCATTTTGACAGGGCAGACAGgtgactctcc ... tggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGT
attccctgatgtgtgttctcttttgttctttctctttttcgcgtgtggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGTCACCGGGAAGAAGCAAGCGCAGGAGAAAACAAACGGCAACAGCAGCTCC
ccctgat putative branch site (score: 28)
ttctcttttgttcttt putative PPT
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactctcctattttcttttatctttcccattccctgatgtgtgttctcttttgttctttctctttttcgcgtgtggcacacagGAAGCGCTTGTTTAGCTTGATGAACTCGCTTCCAACCATCTACGATACGGTCACCGGGAAGAAGCAAGCGCAGGAGAAAACAAACGGCAACAGCAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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