1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagcgtgattctcttgttctctctctccttttctcctttttctttgttcctctcattttctcggttacgtgttctgctggctctcctcctctctcgagctcgagtgcttgtagatcgaacaatcgatcgtcccgccactgatcaacatctcttttgctagcagCAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTCAAGAGAACGCTCACGGGACCCTGGTAACCACGACGCTTGTACGGAAGAA
species | Selaginella moellendorffii |
transcript | EFJ21671 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGGAGAACATCAAGCGAAAGAAACAG CAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTCEST: gi|169044550|gb|FE451122.1|FE451122
genomic: GAGGAGGAGAACATCAAGCGAAAGAAACAGgtagcgtgat ... ttgctagcagCAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTC
EST: GAGGAGGAGAACATCAAGCGAAAGAAACAG CAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTC
genomic: GAGGAGGAGAACATCAAGCGAAAGAAACAGgtagcgtgat ... ttgctagcagCAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTC
tgtagatcgaacaatcgatcgtcccgccactgatcaacatctcttttgctagcagCAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTCAAGAGAACGCTCACGGGACCCTGGTAACCACGACGCTTGTACGGAAGAA
cactgat putative branch site (score: 94)
tctcttttgct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcgtgattctcttgttctctctctccttttctcctttttctttgttcctctcattttctcggttacgtgttctgctggctctcctcctctctcgagctcgagtgcttgtagatcgaacaatcgatcgtcccgccactgatcaacatctcttttgctagcagCAGGCCTTGGAAGTGATCACTCCAATGACCCAACACCTCCCAAAGATGCTCAAGAGAACGCTCACGGGACCCTGGTAACCACGACGCTTGTACGGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA