1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgagacacgtttttagctcatagatttttcatgttcttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGGATGTACGAGCAG
species | Selaginella moellendorffii |
transcript | EFJ21441 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCTCCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAG GATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGGEST: gi|169111418|gb|FE509680.1|FE509680
genomic: GGTCTCCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAGgtatgagaca ... ttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGG
EST: GGTCTCCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAG GATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGGEST: gi|169111417|gb|FE509679.1|FE509679
genomic: GGTCTCCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAGgtatgagaca ... ttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGG
EST: CCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAG GATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGG
genomic: CCAGCTCATTGCATCGAGTACGTTCACCTCATACAATGGGGTCAGgtatgagaca ... ttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGG
gtatgagacacgtttttagctcatagatttttcatgttcttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGGATGTACGAGCAG
tttttcatgttctt CT-rich tract
atagattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagacacgtttttagctcatagatttttcatgttcttattggcagGATCGAGAAGGCGAGTCTTTTAATCCTGACAACCCGGAACATATGACGTGGATGTACGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG