1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaaaatagatagatatgatctcttgacacgcagcttttcttgactcttcttcttcgtcgtgttgtttctaaactttttttatcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGCTGTCGTGG
species | Selaginella moellendorffii |
transcript | EFJ20873 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACG ACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGEST: gi|169062201|gb|FE469715.1|FE469715
genomic: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACGgtaaaaaata ... atcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
EST: CGAGGACTGGTTCCATTTAACTGGCCTCATTCACG ACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGEST: gi|169044880|gb|FE451972.1|FE451972
genomic: CGAGGACTGGTTCCATTTAACTGGCCTCATTCACGgtaaaaaata ... atcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
EST: CGAGGACTGGTTCCATTTAACTGGCCTCATTCACG ACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGEST: gi|169037880|gb|FE443592.1|FE443592
genomic: CGAGGACTGGTTCCATTTAACTGGCCTCATTCACGgtaaaaaata ... atcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
EST: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACG ACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGEST: gi|169044881|gb|FE451973.1|FE451973
genomic: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACGgtaaaaaata ... atcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
EST: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACG ACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
genomic: CAAGGATCATCCAAACGAGGACTGGTTCCATTTAACTGGCCTCATTCACGgtaaaaaata ... atcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGG
tttcttgactcttcttcttcgtcgtgttgtttctaaactttttttatcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGCTGTCGTGG
ttctaaa putative branch site (score: 7)
ctttttttatcct CT-rich tract
ttgtttctaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaatagatagatatgatctcttgacacgcagcttttcttgactcttcttcttcgtcgtgttgtttctaaactttttttatcctgacagACCTTGGCAAGGTGTTGCTGCACCCCAAGTTTGGCGAAGAACCGCAGTGGGCTGTCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC