1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtcagtaaacagctactgtgacggttttttaagcttcgtttcatatgatgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACATGGAGAAAATGAGAAGCGAGTTGAG
species | Selaginella moellendorffii |
transcript | EFJ20666 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTG GAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACEST: gi|169072110|gb|FE478722.1|FE478722
genomic: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTGgtacgtcagt ... atgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGAC
EST: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTG GAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACEST: gi|169063275|gb|FE472733.1|FE472733
genomic: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTGgtacgtcagt ... atgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGAC
EST: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTG GAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACEST: gi|169107519|gb|FE511684.1|FE511684
genomic: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTGgtacgtcagt ... atgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGAC
EST: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTG GAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGAC
genomic: TGCATGACGCGTCGCTTTCCAAGTTCAAGGCTGAAATGCAGAGTTCTTTGgtacgtcagt ... atgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGAC
cagtaaacagctactgtgacggttttttaagcttcgtttcatatgatgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACATGGAGAAAATGAGAAGCGAGTTGAG
ttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcagtaaacagctactgtgacggttttttaagcttcgtttcatatgatgcgtacagGAGCACCACTTTGCTACCTTGCAGCGTGAATCGGAGAGGCTCCGGACGGACATGGAGAAAATGAGAAGCGAGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC