1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagttttggctatgcttttcccttcgaggttaagtttcttatttcatttctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTGCACAGCCGAAG
species | Selaginella moellendorffii |
transcript | EFJ20576 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169094801|gb|FE492952.1|FE492952
genomic: TGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: GCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCNTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169071822|gb|FE478109.1|FE478109
genomic: GCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169113190|gb|FE514436.1|FE514436
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169055187|gb|FE461061.1|FE461061
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169062833|gb|FE472349.1|FE472349
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169065603|gb|FE475883.1|FE475883
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169094802|gb|FE492953.1|FE492953
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169113973|gb|FE516444.1|FE516444
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169038427|gb|FE446128.1|FE446128
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169071823|gb|FE478110.1|FE478110
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTEST: gi|169037548|gb|FE446289.1|FE446289
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
EST: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAG GTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
genomic: CGTACGATATGATCGGTGGGCTTGACCAGCAAATCAAAGAGATCAAAGAGgtcagttttg ... tctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATT
ttttggctatgcttttcccttcgaggttaagtttcttatttcatttctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTGCACAGCCGAAG
tttcttatttcatttc CT-rich tract
ttaagtttcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttttggctatgcttttcccttcgaggttaagtttcttatttcatttctttctcagGTTATTGAGCTTCCGATCAAGCATCCTGAGCTTTTTGAGAGCCTGGGTATTGCACAGCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT