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gtaagtaacttgtgtgtcaaggaaaattaactcattgttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA
species | Selaginella moellendorffii |
transcript | EFJ18240 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTTCGTGGGTCTCGGAGTTCTTGCTCTAAC TGCTACCATCTGGCCAGATGTCAAAGATTTCATCCCAAAGGCCTGGGACGAEST: gi|169110322|gb|FE512081.1|FE512081
genomic: TACTTCGTGGTTCTCGGAGTTCTTGCTCTAACgtaagtaact ... gttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGA
EST: AATGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAAC TGCTACCATCTGGCCAGATGTCAAAGATTTCATTCCAAAGGCCTGGGACGAEST: gi|169059126|gb|FE468271.1|FE468271
genomic: AACGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAACgtaagtaact ... gttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGA
EST: AACGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAAC TGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAEST: gi|169074073|gb|FE481733.1|FE481733
genomic: AACGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAACgtaagtaact ... gttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGA
EST: AATGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAAC TGCTACCATCTGGCCAGATGTCAAAGATTTCATTCCAAAGGCCTGGGACGA
genomic: AACGGGATACTCACGCTCTACTTCGTGGTTCTCGGAGTTCTTGCTCTAACgtaagtaact ... gttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGA
gtaagtaacttgtgtgtcaaggaaaattaactcattgttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA
aattaac putative branch site (score: 5)
ttgttctt putative PPT
aaaattaactcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacttgtgtgtcaaggaaaattaactcattgttcttgtagTGCTACCATCTGGCCAGATGTCAAAGACTTCATTCCAAAGGCCTGGGACGAGAAAGAGATTTCTTTACATCTTCCGTATTTCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA