Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatatcaggataagttttgtcataggctcgtcattctaagttgtctttctcaatcacagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG

Basic information

species Selaginella moellendorffii
transcript EFJ17922
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17922 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G180704_T01 (Zea mays), 3'ss of exon 4
---------------------------------------------gtcagtatatcaggataagttttgtcatag--gctcgtcattctaagttgtctttctcaatcacagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG
                                              |||||||  | | ||    |    | | |  |   | || |  |   |   ||| |      |||||||| || ||||| || ||||||||||| ||||| || || |||||||||||||| || || || || ||| | ||||| |  || || ||||| ||||
gtaagctttctataataggtcaaagatataaagaggacccattagatcagtatggccgtatttcctacccctttgttggcaggcagtacagtatccttttattttctgcagGTGATATCTGGTAAACTATATGCTGGACCTGAAGTTGATGTGTGGAGCTGTGGGGTTATTCTTTATGCTCTTTTATGTGGTACTCTGCCATTTGATGACG

upper sequence: EFJ17922 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA13G05700.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------gtcagtatatcagga----taagttttgtcataggc----tcgtcattc-taagttg--------tctttctcaatcacagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG
                                                           | | |||||||  |    | ||  ||  |||   |    | || |||  ||| |             || |   |||||||| || || || ||  | |||||||||||||||||||| || ||||||||||| || ||  |||| || |||||||||||||  ||||| ||||| || |
gtttgtaaataattaaattgtaacggaataggatattattattaatgttattattattattattatatcactacttctgagactttacatttacctccttgtgattaataaatcaaggataaactgttgtttttcacagGTTATCTCTGGAAAATTGTATGCTGGACCAGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATG

upper sequence: EFJ17922 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA18G49770.1 (Glycine max), 3'ss of exon 5
-------------------------gtcagtatatcaggataagttttgtcataggctcgtcattctaagttgtctttctcaatcacagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG
                          | | | | | ||||||  | |     |  |   ||| |  | |    | ||  |   |||||||| || || || ||  | ||||||||||| ||||| || || ||||||||||| || ||  |||| || ||||| ||||||| |||||| ||||| || |
gtttgtaatggaatacacggcaacaattattgt-tgaggatatatatgtgtgtgtgtgtgtcttggttacactttttcatttttcacagGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCCCTTCTTTGTGGCACCCTTCCTTTTGATGATG

upper sequence: EFJ17922 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT3G01090.2 (Arabidopsis thaliana), 3'ss of exon 4
-------------------------gtcagtatatcaggataagttttgtcataggctcgtcattctaagttgtctttctcaatca---cagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG
                             | |||  |  || ||  ||||   |         || ||       | | | |||     ||||| ||||| || ||| | |||||||| || |||||||| || ||||||||||| |||||||| ||||| ||||||||||| |  ||||| ||||| || |
gtaagtgcttcagccctcaggtatctgaggaatactataattaggcttgtttcaaatgataggttatagtcgagatctataaattgtttcagGTAATTTCGGGCAAGTTATATGCTGGCCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTACGCTCTTCTCTGTGGGACGCTTCCATTTGATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaggataagttttgtcataggctcgtcattctaagttgtctttctcaatcacagGTGATTTCCGGTAAGCTCTATGCTGGACCAGAAGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACG
                                    ttgtctttctc  CT-rich tract
     ataagtttt  TA-rich tract