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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgattgttcatttctatcttctgccgaactacatacttaacgaggtacacagGTCTTTGATGAAGCGGATATGCTCTTATCAGGGGGTTTTGAACGGCAAGTGACCCAACGGTTGATTCCACTGCTCAGGCTTGCCGAGAAAAAGCTTGCTG

Basic information

species Selaginella moellendorffii
transcript EFJ17282
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076454|gb|FE486043.1|FE486043
EST:     ATCCAAAGCAAAAGCGTAGAACGGCTTTTTTAAGAGATGCCCGTTATGTG                         GTCTTTGATGAAGCGGATATGCTCTTATCAGGGGGTTTTGAACGGCAAGTG
genomic: ATCCAAAGCAAAAGCGTAGAACGGCTTTTTTAAGAGATGCCCGTTATGTGgtgagttgat ... aggtacacagGTCTTTGATGAAGCGGATATGCTCTTATCAGGGGGTTTTGAACGGCAAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgattgttcatttctatcttctgccgaactacatacttaacgaggtacacagGTCTTTGATGAAGCGGATATGCTCTTATCAGGGGGTTTTGAACGGCAAGTGACCCAACGGTTGATTCCACTGCTCAGGCTTGCCGAGAAAAAGCTTGCTG
                                     acttaac  putative branch site (score: 3)
            atttctat  TA-rich tract