1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaggtggaaggaaagctggtctatataaccaccctgcctgtgccttgtgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACAATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
species | Selaginella moellendorffii |
transcript | EFJ16567 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169038264|gb|FE445289.1|FE445289
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169031548|gb|FE439013.1|FE439013
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169065831|gb|FE474382.1|FE474382
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169110549|gb|FE513647.1|FE513647
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169039347|gb|FE447228.1|FE447228
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCEST: gi|169062506|gb|FE469968.1|FE469968
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169045543|gb|FE450736.1|FE450736
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTEST: gi|169078455|gb|FE488330.1|FE488330
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCT
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169056092|gb|FE465644.1|FE465644
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169060700|gb|FE467438.1|FE467438
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169098742|gb|FE500254.1|FE500254
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCEST: gi|169074031|gb|FE483472.1|FE483472
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
EST: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTCCTTCCCTCCA-GGTCCAGGTGGGCCTCTTC
genomic: TTGTCCTGGACGAGGCGGACGAGATGCTGTCCCGCGGTTTCAAGGACCAGgtaaggtgga ... tgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTC
ggtggaaggaaagctggtctatataaccaccctgcctgtgccttgtgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACAATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
atataac putative branch site (score: 123)
tctatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtggaaggaaagctggtctatataaccaccctgcctgtgccttgtgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACAATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA