1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttcttaacttctctctgtctttagatttcgttcttctgactggttgagttctttggatttttcatcttgttgctcacgacgcgattctctgttttacagATCTATGATATCTTCCAGCTCCTGCCCGCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACCATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
species | Selaginella moellendorffii |
transcript | EFJ16547 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tgagttctttggatttttcatcttgttgctcacgacgcgattctctgttttacagATCTATGATATCTTCCAGCTCCTGCCCGCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACCATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
tgctcac putative branch site (score: 14)
ttctctgtttt putative PPT
atttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcttaacttctctctgtctttagatttcgttcttctgactggttgagttctttggatttttcatcttgttgctcacgacgcgattctctgttttacagATCTATGATATCTTCCAGCTCCTGCCCGCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACCATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
cttctta
- - - -acttctc
- - - - - - - - tgtcttt
- - - - - - - - - - - - -atttcgt
- - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - gttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctc