1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttgttcttcttttagttttctatgtctttttgtttcggaagatggctattaccttttcctctttgagggaagcactgatttgcccgtcatgatttctcagGTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACCATGGAAGACATATTGATTTCTCTGAAACGAGAGATGGCTTTGCCGCACA
species | Selaginella moellendorffii |
transcript | EFJ16450 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTT GTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACCEST: gi|169086873|gb|FE495628.1|FE495628
genomic: AATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTTgtaagttgtt ... gatttctcagGTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACC
EST: AATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTT ATAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACC
genomic: AATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTTgtaagttgtt ... gatttctcagGTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACC
ctattaccttttcctctttgagggaagcactgatttgcccgtcatgatttctcagGTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACCATGGAAGACATATTGATTTCTCTGAAACGAGAGATGGCTTTGCCGCACA
cactgat putative branch site (score: 13)
tttctc putative PPT
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgttcttcttttagttttctatgtctttttgtttcggaagatggctattaccttttcctctttgagggaagcactgatttgcccgtcatgatttctcagGTAGATCCCAAGAACTTCCCCATGCTAAGCAACTGGCGACGAGATTACACCATGGAAGACATATTGATTTCTCTGAAACGAGAGATGGCTTTGCCGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG