1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgatccttgcaagtttgctttgttttttcgatgcttgacgtggactctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAACGGTTTGCGGGCATTACTTTTGTAGTTTATGTTGGACAG
species | Selaginella moellendorffii |
transcript | EFJ16231 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAG ATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAEST: gi|169107798|gb|FE513237.1|FE513237
genomic: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAGgtgatccttg ... ctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
EST: AGACAGTTGGTTTGCTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAG ATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAEST: gi|169115247|gb|FE516989.1|FE516989
genomic: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAGgtgatccttg ... ctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
EST: AGACAGTTGGTTTGCTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAG ATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAEST: gi|169079416|gb|FE488082.1|FE488082
genomic: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAGgtgatccttg ... ctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
EST: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAG ATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAEST: gi|169079994|gb|FE489947.1|FE489947
genomic: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAGgtgatccttg ... ctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
EST: AGACAGTTGGTTTGCTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAG ATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
genomic: AGACAGTTGGCTTACTGGAGAAATCCGCGGGGAGGAGACCTCCCAAAGAGgtgatccttg ... ctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCA
gatccttgcaagtttgctttgttttttcgatgcttgacgtggactctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAACGGTTTGCGGGCATTACTTTTGTAGTTTATGTTGGACAG
gcttgac putative branch site (score: 19)
ctctacttcc putative PPT
tttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatccttgcaagtttgctttgttttttcgatgcttgacgtggactctacttccagATTGTTTGCGGGATCTGCTTCGATGCTTTCGGGGTTGACAAGATGAGAGCAACGGTTTGCGGGCATTACTTTTGTAGTTTATGTTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA