1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
species | Selaginella moellendorffii |
transcript | EFJ15673 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAAEST: gi|169067826|gb|FE473397.1|FE473397
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAAEST: gi|169043638|gb|FE452693.1|FE452693
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
agacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
cttcttttctggttta CT-rich tract
tttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTGCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG