1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagagaaacaccacagtagaacactaatggattctcgtttcttcttctctccatagGCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGATGAGAAAGCTCGTCGGGAGTTTGCTAT
species | Selaginella moellendorffii |
transcript | EFJ15187 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTCCCAACTTACAAGACAAATCTCAAGCGCATCATCTCGCACCTCAAG GCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGATEST: gi|169020948|gb|FE429335.1|FE429335
genomic: CACTCCCAACTTACAAGACAAATCTCAAGCGCATCATCTCGCACCTCAAGgtagagaaac ... ctctccatagGCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGAT
EST: CACTCCCAACTTACAAGACAAATCTCAAGCGCATCATCTCGCACCTCAAG GCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGAT
genomic: CACTCCCAACTTACAAGACAAATCTCAAGCGCATCATCTCGCACCTCAAGgtagagaaac ... ctctccatagGCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGAT
agagaaacaccacagtagaacactaatggattctcgtttcttcttctctccatagGCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGATGAGAAAGCTCGTCGGGAGTTTGCTAT
cactaat putative branch site (score: 21)
ttctcgtttcttcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagaaacaccacagtagaacactaatggattctcgtttcttcttctctccatagGCAGTCTCTAAACGCACACACATCGTCCTCATCACTCCTCCTCCAATTGATGAGAAAGCTCGTCGGGAGTTTGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC