1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggattttcactttgctagacacgattcttagctgaaacttcgtgttcttgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATGTCCTCGTTTGAGCAGAAGCTGGAACCGAACGAAAAGGAGTGGCAGTATC
species | Selaginella moellendorffii |
transcript | EFJ15163 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAG ATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATGEST: gi|169113992|gb|FE516463.1|FE516463
genomic: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAGgtggattttc ... tgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATG
EST: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAG ATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATGEST: gi|169061018|gb|FE470648.1|FE470648
genomic: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAGgtggattttc ... tgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATG
EST: CACGAAACAATACGACGCAGAGACGNCA-CAACGCTCCCTACTCTTTCAG ATTGCTTATCCGGAGATCGAGGACAATGCCEST: gi|169045847|gb|FE453081.1|FE453081
genomic: CACGAAACAATACGACGCAGAGACG-CAACAACGCTCCCTACTCTTTCAGgtggattttc ... tgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCC
EST: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAG ATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATG
genomic: TCACGAAACAATACGACGCAGAGACGCAACAACGCTCCCTACTCTTTCAGgtggattttc ... tgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATG
ttttcactttgctagacacgattcttagctgaaacttcgtgttcttgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATGTCCTCGTTTGAGCAGAAGCTGGAACCGAACGAAAAGGAGTGGCAGTATC
ttcttgtctt CT-rich tract
attctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggattttcactttgctagacacgattcttagctgaaacttcgtgttcttgtcttatagATTGCTTATCCGGAGATCGAGGACAATGCCAAGCCACGGTACCGTTTGATGTCCTCGTTTGAGCAGAAGCTGGAACCGAACGAAAAGGAGTGGCAGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG