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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgatgttttcatttctccaagttatcggcttgtgtatcttaacttcgagaggtttttgacgcgactgattgtgaaatcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGGAACAGTGACACCGTAACAGCAGTGGTGGTACCACCTTATCTCAACAGC

Basic information

species Selaginella moellendorffii
transcript EFJ15151
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169062304|gb|FE470494.1|FE470494
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169052102|gb|FE463223.1|FE463223
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169040696|gb|FE447331.1|FE447331
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169103110|gb|FE506307.1|FE506307
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169114563|gb|FE516633.1|FE516633
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169052820|gb|FE461198.1|FE461198
EST:     GCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGGAGA-GCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGG-AGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169112651|gb|FE509424.1|FE509424
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169036992|gb|FE446058.1|FE446058
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169075995|gb|FE482862.1|FE482862
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169108139|gb|FE512512.1|FE512512
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169030413|gb|FE438669.1|FE438669
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169115603|gb|FE517813.1|FE517813
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169098472|gb|FE500166.1|FE500166
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169039551|gb|FE449941.1|FE449941
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169103252|gb|FE505630.1|FE505630
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169105004|gb|FE505885.1|FE505885
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169071460|gb|FE480425.1|FE480425
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169107737|gb|FE511460.1|FE511460
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169103587|gb|FE508955.1|FE508955
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169093294|gb|FE492676.1|FE492676
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169064861|gb|FE475557.1|FE475557
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169094120|gb|FE496100.1|FE496100
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169054674|gb|FE461614.1|FE461614
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169103670|gb|FE506867.1|FE506867
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169060857|gb|FE469252.1|FE469252
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169110099|gb|FE511585.1|FE511585
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169054643|gb|FE461583.1|FE461583
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169055017|gb|FE462945.1|FE462945
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169113217|gb|FE515191.1|FE515191
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169115602|gb|FE517812.1|FE517812
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169037462|gb|FE445527.1|FE445527
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169070621|gb|FE478845.1|FE478845
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169108140|gb|FE512513.1|FE512513
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169113226|gb|FE515499.1|FE515499
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169022293|gb|FE431252.1|FE431252
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169065038|gb|FE475110.1|FE475110
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169019654|gb|FE427990.1|FE427990
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169040697|gb|FE447332.1|FE447332
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: gi|169066514|gb|FE474100.1|FE474100
EST:     GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG                         GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 141

GCCAGATGCTCTACGCTCTTCGAGCCTCCCTCGACTTGATCTTCGAGGAGGGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGGAACAGTGACACCGTAACAGCAGTGGTGGTACCACCTTATCTCAACAGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtatcttaacttcgagaggtttttgacgcgactgattgtgaaatcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGGAACAGTGACACCGTAACAGCAGTGGTGGTACCACCTTATCTCAACAGC
                                              tcttcgc  CT-rich tract
     atcttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgatgttttcatttctccaagttatcggcttgtgtatcttaacttcgagaggtttttgacgcgactgattgtgaaatcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGGAACAGTGACACCGTAACAGCAGTGGTGGTACCACCTTATCTCAACAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG