1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatggctcttcgtcttctatttactccccaaccttttgtctactgtagGGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCCCCTCGGAAGACATCTGTGACGAGTTCCTCAAGTCTGTATTTCTTAGCCG
species | Selaginella moellendorffii |
transcript | EFJ14939 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAAGACCGTGTCTTTCGCTTGACAGGGATGACTCTGTCGACCTCAG GGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCCEST: gi|70669168|gb|DN837745.1|DN837745
genomic: GTGGAAAGACCGTGTCTTTCGCTTGACAGGGATGACTCTGTCGACCTCAGgtatggctct ... tctactgtagGGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCC
EST: GTGGAAAGACCGTGTCTTTCGCTTGACAGGGATGACTCTGTCGACCTCAG GGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCC
genomic: GTGGAAAGACCGTGTCTTTCGCTTGACAGGGATGACTCTGTCGACCTCAGgtatggctct ... tctactgtagGGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCC
gtatggctcttcgtcttctatttactccccaaccttttgtctactgtagGGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCCCCTCGGAAGACATCTGTGACGAGTTCCTCAAGTCTGTATTTCTTAGCCG
ccttttgtct CT-rich tract
ttctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctcttcgtcttctatttactccccaaccttttgtctactgtagGGAACAAGGAAGAAAATTCATTCGATCGCTGCAAGCCTGGAGAGCAGAGCCCCTCGGAAGACATCTGTGACGAGTTCCTCAAGTCTGTATTTCTTAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA