1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcctttctttctttttttttcttcttttccattcctatttgtctaatgcatgcactatcaacttctgaggctgacaaatctcgttgttttctaatgtagGTGTTCTCAGCTGAGTACAGCTTAATCTGCACGATTGCTCGCTACCAAAAACCTTACATCTCGTTGATGGACGGGATAACCATGGGTTTTGGCATCGGCT
species | Selaginella moellendorffii |
transcript | EFJ14541 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGCAGCGACTCTAAAAGATGACATCCATTCACCTCTCTTGCAACAG GTGTTCTCAGCTGAGTACAGCTTAATCTGCACGATTGCTCGCTACCAAAAA
genomic: GGCTCGCAGCGACTCTAAAAGATGACATCCATTCACCTCTCTTGCAACAGgtctgaattt ... tctaatgtagGTGTTCTCAGCTGAGTACAGCTTAATCTGCACGATTGCTCGCTACCAAAAA
aatgcatgcactatcaacttctgaggctgacaaatctcgttgttttctaatgtagGTGTTCTCAGCTGAGTACAGCTTAATCTGCACGATTGCTCGCTACCAAAAACCTTACATCTCGTTGATGGACGGGATAACCATGGGTTTTGGCATCGGCT
ttctaat putative branch site (score: 5)
tctcgttgttttct CT-rich tract
ttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctttctttctttttttttcttcttttccattcctatttgtctaatgcatgcactatcaacttctgaggctgacaaatctcgttgttttctaatgtagGTGTTCTCAGCTGAGTACAGCTTAATCTGCACGATTGCTCGCTACCAAAAACCTTACATCTCGTTGATGGACGGGATAACCATGGGTTTTGGCATCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ttccttt
- -ctttctt
- - - - - - - - -ttttctt
- - - - - - - - - - - - - tttccat
- - - - - - - - - - - - - - - - - - - tttgtct
- - - - - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctga